spycone
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Gene-level workflow
Transcript-level workflow
API
spycone
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Index
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A
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B
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C
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D
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G
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I
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L
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M
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P
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R
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S
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T
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V
_
__copy__() (spycone.dataset method)
_final_n_cluster (spycone.clustering attribute)
_lables (spycone.clustering attribute)
_prototype (spycone.clustering attribute)
_silhouette_index (spycone.clustering attribute)
A
all_degree (spycone.BioNetwork attribute)
B
BioNetwork (class in spycone)
C
clustering (class in spycone)
clusters_gsea() (in module spycone)
connected_nodes (spycone.BioNetwork attribute)
D
dataset (class in spycone)
G
genelist_clusters (spycone.clustering attribute)
gsea_plot() (in module spycone)
I
index_clusters (spycone.clustering attribute)
iso_function (class in spycone)
L
list_gsea() (in module spycone)
M
max_degree (spycone.BioNetwork attribute)
modules_gsea() (in module spycone)
P
preprocess (class in spycone)
R
remove_objects() (spycone.dataset method)
run_domain_domino() (in module spycone)
run_domino() (in module spycone)
S
SF_coexpression() (in module spycone)
SF_motifsearch() (in module spycone)
switch_plot() (in module spycone)
symbs_clusters (spycone.clustering attribute)
T
timeserieslist (spycone.dataset attribute)
total_node_degree_counts (spycone.BioNetwork attribute)
total_undirected_edgecount_nodedegree (spycone.BioNetwork attribute)
V
vis_all_clusters() (in module spycone)
vis_better_modules() (in module spycone)
vis_modules() (in module spycone)
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