Index

_

__copy__() (spycone.dataset method) _final_n_cluster (spycone.clustering attribute)

_lables (spycone.clustering attribute) _prototype (spycone.clustering attribute) _silhouette_index (spycone.clustering attribute)

A

all_degree (spycone.BioNetwork attribute)

B

BioNetwork (class in spycone)

C

clustering (class in spycone)

clusters_gsea() (in module spycone) connected_nodes (spycone.BioNetwork attribute)

D

dataset (class in spycone)

G

genelist_clusters (spycone.clustering attribute)

gsea_plot() (in module spycone)

I

index_clusters (spycone.clustering attribute)

iso_function (class in spycone)

L

list_gsea() (in module spycone)

M

max_degree (spycone.BioNetwork attribute)

modules_gsea() (in module spycone)

P

preprocess (class in spycone)

R

remove_objects() (spycone.dataset method)

run_domain_domino() (in module spycone) run_domino() (in module spycone)

S

SF_coexpression() (in module spycone) SF_motifsearch() (in module spycone)

switch_plot() (in module spycone) symbs_clusters (spycone.clustering attribute)

T

timeserieslist (spycone.dataset attribute)

total_node_degree_counts (spycone.BioNetwork attribute) total_undirected_edgecount_nodedegree (spycone.BioNetwork attribute)

V

vis_all_clusters() (in module spycone)

vis_better_modules() (in module spycone) vis_modules() (in module spycone)